UPDATE: Semi-solved. For others who get this problem, CDPR is aware of the issue. In the meantime starting a new B&W save file from the main menu and progressing through Wine Wars did get the monster nest objectives to clear properly and the trophy to pop.
OG POST:
Encountering the glitch where the Belgaard vineyard endrega nest isn't clearing (killed 4 endrega, looted enemies, destroyed and looted nest, looted journal), nor is the centipede nest objective in the nearby mini-canyon (killed 2 centipedes, looted enemies, destroyed and looted nest, looted letter). I get the exp for destroying the nests and get the loot but it never actually clears the objectives so I get a maximum of "3/5 problems solved" and cannot progress.
I had not cleared either area before this quest. Tried PS4 and PS5 game versions (versions 4.03 and 4.020.00), meditated, left and came back, reloaded previous saves, tried mixing up the order of events (enemies-nest-loot, nest-enemies-loot, clear nest before quest-start quest, etc.), restarted the game and console, google deepdived, contacted CDPR support. But oddly people still seem to be obtaining the trophy The Grapes of Wrath Stomped.